Identification and Characterization of Carboxyl Esterases of Gill Chamber-Associated Microbiota in the Deep-Sea Shrimp Rimicaris exoculata by Using Functional Metagenomics - Laboratoire de Microbiologie des Environnements Extrêmophiles Accéder directement au contenu
Article Dans Une Revue Applied and Environmental Microbiology Année : 2015

Identification and Characterization of Carboxyl Esterases of Gill Chamber-Associated Microbiota in the Deep-Sea Shrimp Rimicaris exoculata by Using Functional Metagenomics

Maria Alcaide
  • Fonction : Auteur
Anatoli Tchigvintsev
  • Fonction : Auteur
Monica Martinez-Martinez
  • Fonction : Auteur
Ana Popovic
  • Fonction : Auteur
Oleg N. Reva
  • Fonction : Auteur
Alvaro Lafraya
  • Fonction : Auteur
Rafael Bargiela
  • Fonction : Auteur
Taras Y. Nechitaylo
  • Fonction : Auteur
Ruth Matesanz
  • Fonction : Auteur
Mohamed Jebbar
  • Fonction : Auteur
Michail M. Yakimov
  • Fonction : Auteur
Alexei Savchenko
  • Fonction : Auteur
Olga V. Golyshina
  • Fonction : Auteur
Alexander F. Yakunin
  • Fonction : Auteur
Peter N. Golyshin
  • Fonction : Auteur
Manuel Ferrer
  • Fonction : Auteur

Résumé

The shrimp Rimicaris exoculata dominates the fauna in deep-sea hydrothermal vent sites along the Mid-Atlantic Ridge (depth, 2,320 m). Here, we identified and biochemically characterized three carboxyl esterases from microbial communities inhabiting the R. exoculata gill that were isolated by naive screens of a gill chamber metagenomic library. These proteins exhibit low to moderate identity to known esterase sequences (<= 52%) and to each other (11.9 to 63.7%) and appear to have originated from unknown species or from genera of Proteobacteria related to Thiothrix/Leucothrix (MGS-RG1/RG2) and to the Rhodobacteraceae group (MGS-RG3). A library of 131 esters and 31 additional esterase/lipase preparations was used to evaluate the activity profiles of these enzymes. All 3 of these enzymes had greater esterase than lipase activity and exhibited specific activities with ester substrates (<= 356 U mg(-1)) in the range of similar enzymes. MGS-RG3 was inhibited by salts and pressure and had a low optimal temperature (30 degrees C), and its substrate profile clustered within a group of low-activity and substrate-restricted marine enzymes. In contrast, MGS-RG1 and MGS-RG2 were most active at 45 to 50 degrees C and were salt activated and barotolerant. They also exhibited wider substrate profiles that were close to those of highly active promiscuous enzymes from a marine hydrothermal vent (MGS-RG2) and from a cold brackish lake (MGS-RG1). The data presented are discussed in the context of promoting the examination of enzyme activities of taxa found in habitats that have been neglected for enzyme prospecting; the enzymes found in these taxa may reflect distinct habitat-specific adaptations and may constitute new sources of rare reaction specificities.

Dates et versions

hal-04200589 , version 1 (08-09-2023)

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Maria Alcaide, Anatoli Tchigvintsev, Monica Martinez-Martinez, Ana Popovic, Oleg N. Reva, et al.. Identification and Characterization of Carboxyl Esterases of Gill Chamber-Associated Microbiota in the Deep-Sea Shrimp Rimicaris exoculata by Using Functional Metagenomics. Applied and Environmental Microbiology, 2015, 81 (6), pp.2125-2136. ⟨10.1128/AEM.03387-14⟩. ⟨hal-04200589⟩
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