A. Akane, K. Matsubara, H. Nakamura, S. Takahashi, and K. Kimura, Identification of the Heme Compound Copurified with Deoxyribonucleic Acid (DNA) from Bloodstains, a Major Inhibitor of Polymerase Chain Reaction (PCR) Amplification, Journal of Forensic Sciences, vol.39, issue.2, pp.362-372, 1994.
DOI : 10.1520/JFS13607J

W. A. Al-soud, R. , and P. , Capacity of nine thermostable DNA polymerases To mediate DNA amplification in the presence of PCR-inhibiting samples, Appl. Environ. Microbiol, vol.64, pp.3748-3753, 1998.

W. A. Al-soud, R. , and P. , Purification and Characterization of PCR-Inhibitory Components in Blood Cells, Journal of Clinical Microbiology, vol.39, issue.2, pp.485-493, 2001.
DOI : 10.1128/JCM.39.2.485-493.2001

B. Arezi, W. Xing, J. A. Sorge, and H. H. Hogrefe, Amplification efficiency of thermostable DNA polymerases, Analytical Biochemistry, vol.321, issue.2, pp.226-235, 2003.
DOI : 10.1016/S0003-2697(03)00465-2

J. Bickley, J. K. Short, D. G. Mcdowell, and H. C. Parkes, Polymerase chain reaction (PCR) detection of Listeria monocytogenes in diluted milk and reversal of PCR inhibition caused by calcium ions, Letters in Applied Microbiology, vol.15, issue.2, pp.153-158, 1996.
DOI : 10.1016/S0140-6736(88)92425-7

B. D. Biles, C. , and B. A. , Low-fidelity Pyrococcus furiosus DNA polymerase mutants useful in error-prone PCR, Nucleic Acids Research, vol.32, issue.22, 2004.
DOI : 10.1093/nar/gnh174

D. K. Braithwaite and J. Ito, Compilation, alignment, and phylogenetic relationships of DNA polymerases, Nucleic Acids Research, vol.21, issue.4, pp.787-802, 1993.
DOI : 10.1093/nar/21.4.787

URL : http://doi.org/10.1093/nar/21.4.787

B. Budowle, A. J. Eisenberg, V. Daal, and A. , Validity of Low Copy Number Typing and Applications to Forensic Science, Croatian Medical Journal, vol.50, issue.3, pp.207-217, 2009.
DOI : 10.3325/cmj.2009.50.207

M. A. Cambon-bonavita, P. Schmitt, M. Zieger, J. M. Flaman, F. Lesongeur et al., Cloning, expression, and characterization of DNA polymerase I from the hyperthermophilic archaea Thermococcus fumicolans, Extremophiles, vol.4, issue.4, pp.215-225, 1007.
DOI : 10.1007/PL00010714

I. K. Cann and Y. Ishino, Archaeal DNA replication: identifying the pieces to solve a puzzle, Genetics, vol.152, pp.1249-1267, 1999.

I. K. Cann, K. Komori, H. Toh, S. Kanai, and Y. Ishino, A heterodimeric DNA polymerase: Evidence that members of Euryarchaeota possess a distinct DNA polymerase, Proceedings of the National Academy of Sciences, vol.95, issue.24, pp.14250-14255, 1998.
DOI : 10.1073/pnas.95.24.14250

B. Castrec, C. Rouillon, G. Henneke, D. Flament, J. Querellou et al., Binding to PCNA in Euryarchaeal DNA Replication Requires Two PIP Motifs for DNA Polymerase D and One PIP Motif for DNA Polymerase B, Journal of Molecular Biology, vol.394, issue.2, pp.209-218, 2009.
DOI : 10.1016/j.jmb.2009.09.044

URL : https://hal.archives-ouvertes.fr/hal-00609928

F. Charbonnier, P. Forterre, G. Erauso, and D. Prieur, Purification of plasmids from thermophilic and hyperthermophilic archaea, Archaea: A Laboratory Manual, pp.87-90, 1995.

A. Chien, D. B. Edgar, and J. M. Trela, Deoxyribonucleic acid polymerase from the extreme thermophile Thermus aquaticus, J. Bacteriol, vol.127, pp.1550-1557, 1976.

J. Cline, J. C. Braman, and H. H. Hogrefe, PCR fidelity of pfu DNA polymerase and other thermostable DNA polymerases, Nucleic Acids Research, vol.24, issue.18, pp.3546-3551, 1996.
DOI : 10.1093/nar/24.18.3546

L. Cubonova, T. Richardson, B. W. Burkhart, Z. Kelman, B. A. Connolly et al., Archaeal DNA Polymerase D but Not DNA Polymerase B Is Required for Genome Replication in Thermococcus kodakarensis, Journal of Bacteriology, vol.195, issue.10, pp.2322-2328, 1128.
DOI : 10.1128/JB.02037-12

M. Delarue, O. Poch, N. Tordo, D. Moras, A. et al., An attempt to unify the structure of polymerases, "Protein Engineering, Design and Selection", vol.3, issue.6, pp.461-467, 1990.
DOI : 10.1093/protein/3.6.461

K. A. Eckert and T. A. Kunkel, DNA polymerase fidelity and the polymerase chain reaction., Genome Research, vol.1, issue.1, pp.17-24, 1991.
DOI : 10.1101/gr.1.1.17

M. J. Fogg, L. H. Pearl, C. , and B. A. , Structural basis for uracil recognition by archaeal family B DNA polymerases, Nature Structural Biology, vol.9, issue.12, pp.922-927, 2002.
DOI : 10.1038/nsb867

F. J. Ghadessy, N. Ramsay, F. Boudsocq, D. Loakes, A. Brown et al., Generic expansion of the substrate spectrum of a DNA polymerase by directed evolution, Nature Biotechnology, vol.18, issue.6, pp.755-759, 1038.
DOI : 10.1038/382278a0

J. Gouge, C. Ralec, G. Henneke, and M. Delarue, Molecular Recognition of Canonical and Deaminated Bases by P. abyssi Family B DNA Polymerase, Journal of Molecular Biology, vol.423, issue.3, pp.315-336, 2012.
DOI : 10.1016/j.jmb.2012.07.025

URL : https://hal.archives-ouvertes.fr/hal-00775878

G. Henneke, reconstitution of RNA primer removal in Archaea reveals the existence of two pathways, Biochemical Journal, vol.160, issue.2, pp.271-280, 2012.
DOI : 10.1093/jmcb/mjq048

URL : https://hal.archives-ouvertes.fr/hal-00773151

G. Henneke, D. Flament, U. Hubscher, J. Querellou, and J. P. And-raffin, The Hyperthermophilic Euryarchaeota Pyrococcus abyssi Likely Requires the Two DNA Polymerases D and B for DNA Replication, Journal of Molecular Biology, vol.350, issue.1, pp.53-64, 2005.
DOI : 10.1016/j.jmb.2005.04.042

H. H. Hogrefe, J. Cline, A. E. Lovejoy, and K. B. Nielson, [9] DNA polymerases from hyperthermophiles, Methods Enzymol, vol.334, issue.01, pp.91-116, 2001.
DOI : 10.1016/S0076-6879(01)34461-0

M. M. Huang, N. Arnheim, and M. F. Goodman, Extension of base mispairs by Taq DNA polymerase: implications for single nucleotide discrimination in PCR, Nucleic Acids Res, vol.202017, pp.4567-4573, 1992.

U. Hubscher, S. Spadari, G. Villani, and G. Maga, DNA Polymerases: Discovery, Characterization and Functions in Cellular DNA Transactions, 2010.
DOI : 10.1142/7667

M. M. Ijzerman, D. R. Dahling, and G. S. Fout, A method to remove environmental inhibitors prior to the detection of waterborne enteric viruses by reverse transcription-polymerase chain reaction, Journal of Virological Methods, vol.63, issue.1-2, pp.145-153, 1997.
DOI : 10.1016/S0166-0934(96)02123-4

K. Ishii and M. Fukui, Optimization of Annealing Temperature To Reduce Bias Caused by a Primer Mismatch in Multitemplate PCR, Applied and Environmental Microbiology, vol.67, issue.8, 2001.
DOI : 10.1128/AEM.67.8.3753-3755.2001

Y. Ishino, K. Komori, I. K. Cann, and Y. Koga, A novel DNA polymerase family found in Archaea, J. Bacteriol, vol.180, pp.2232-2236, 1998.

C. M. Joyce and T. A. Steitz, Function and Structure Relationships in DNA Polymerases, Annual Review of Biochemistry, vol.63, issue.1, pp.777-822, 1994.
DOI : 10.1146/annurev.bi.63.070194.004021

J. Kaminiwa, K. Honda, Y. Sugano, S. Yano, T. Nishi et al., Vanadium accelerates polymerase chain reaction and expands the applicability of??forensic DNA testing, Journal of Forensic and Legal Medicine, vol.20, issue.4, pp.326-333, 2013.
DOI : 10.1016/j.jflm.2012.09.006

H. L. Katcher and I. Schwartz, A distinctive property of Tth DNA polymerase: enzymatic amplification in the presence of phenol, Biotechniques, vol.16, pp.84-92, 1994.

G. Khan, H. O. Kangro, P. J. Coates, and R. B. Heath, Inhibitory effects of urine on the polymerase chain reaction for cytomegalovirus DNA., Journal of Clinical Pathology, vol.44, issue.5, pp.360-365, 1991.
DOI : 10.1136/jcp.44.5.360

H. Kong, R. B. Kucera, J. , and W. E. , Characterization of a DNA polymerase from the hyperthermophile archaea Thermococcus litoralis. Vent DNA polymerase, steady state kinetics, thermal stability, processivity , strand displacement, and exonuclease activities, J. Biol. Chem, vol.268, pp.1965-1975, 1993.

A. Kornberg and T. A. Baker, DNA Replication, 1992.

F. C. Polbase-gkr847-lawyer, S. Stoffel, R. K. Saiki, S. Y. Chang, P. A. Landre et al., High-level expression, purification, and enzymatic characterization of full-length Thermus aquaticus DNA polymerase and a truncated form, genetic and structural information about DNA polymerases, pp.381-387, 1993.

Y. Le, H. Chen, R. Zagursky, J. H. Wu, and W. Shao, Thermostable DNA Ligase-Mediated PCR Production of Circular Plasmid (PPCP) and Its Application in Directed Evolution via In situ Error-Prone PCR, DNA Research, vol.20, issue.4, pp.375-382, 2013.
DOI : 10.1093/dnares/dst016

G. Lipps, S. Rother, C. Hart, and G. Krauss, A novel type of replicative enzyme harbouring ATPase, primase and DNA polymerase activity, The EMBO Journal, vol.22, issue.10, pp.2516-2525, 2003.
DOI : 10.1093/emboj/cdg246

J. Liu, S. Huang, M. Sun, S. Liu, Y. Liu et al., An improved allele-specific PCR primer design method for SNP marker analysis and its application, Plant Methods, vol.8, issue.1, pp.34-44, 2012.
DOI : 10.1093/bioinformatics/btn025

S. A. Macneill, G. Baldacci, P. M. Burgers, and U. Hubscher, A unified nomenclature for the subunits of eukaryotic DNA polymerase ??, Trends in Biochemical Sciences, vol.26, issue.1, pp.16-17, 2001.
DOI : 10.1016/S0968-0004(00)01709-6

D. Marsic, J. M. Flaman, and J. D. Ng, New DNA polymerase from the hyperthermophilic marine archaeon Thermococcus thioreducens, Extremophiles, vol.25, issue.6, pp.775-788, 2008.
DOI : 10.1007/s00792-008-0181-7

E. O. Mccullum, B. A. Williams, J. Zhang, and J. C. Chaput, Random Mutagenesis by Error-Prone PCR, Methods Mol. Biol, vol.634, pp.103-109, 2010.
DOI : 10.1007/978-1-60761-652-8_7

J. P. Mcdonald, A. Hall, D. Gasparutto, J. Cadet, J. Ballantyne et al., Novel thermostable Y-family polymerases: applications for the PCR amplification of damaged or ancient DNAs, Nucleic Acids Research, vol.34, issue.4, pp.1102-1111, 2006.
DOI : 10.1093/nar/gkj512

H. Moussard, G. Henneke, D. Moreira, V. Jouffe, P. Lopez-garcia et al., Thermophilic Lifestyle for an Uncultured Archaeon from Hydrothermal Vents: Evidence from Environmental Genomics, Applied and Environmental Microbiology, vol.72, issue.3, pp.2268-2271, 2006.
DOI : 10.1128/AEM.72.3.2268-2271.2006

URL : https://hal.archives-ouvertes.fr/hal-00617096

H. Ohmori, E. C. Friedberg, R. P. Fuchs, M. F. Goodman, F. Hanaoka et al., The Y-Family of DNA Polymerases, Molecular Cell, vol.8, issue.1, pp.7-8, 2001.
DOI : 10.1016/S1097-2765(01)00278-7

A. Palud, G. Villani, S. L-'haridon, J. Querellou, J. P. Raffin et al., Intrinsic properties of the two replicative DNA polymerases of Pyrococcus abyssi in replicating abasic sites: possible role in DNA damage tolerance? Recent developments in the optimization of thermostable DNA polymerases for efficient applications, Mol. Microbiol. Trends Biotechnol, vol.70, issue.22, pp.746-761, 2004.

F. B. Perler, S. Kumar, and H. Kong, Thermostable DNA Polymerases, Adv. Protein Chem, vol.48, issue.08, pp.377-435, 1996.
DOI : 10.1016/S0065-3233(08)60367-8

J. Petruska, M. F. Goodman, M. S. Boosalis, L. C. Sowers, C. Cheong et al., Comparison between DNA melting thermodynamics and DNA polymerase fidelity., Proceedings of the National Academy of Sciences, vol.85, issue.17, pp.6252-6256, 1988.
DOI : 10.1073/pnas.85.17.6252

URL : http://www.ncbi.nlm.nih.gov/pmc/articles/PMC281947

T. T. Richardson, L. Gilroy, Y. Ishino, B. A. Connolly, and G. Henneke, Novel inhibition of archaeal family-D DNA polymerase by uracil, Nucleic Acids Research, vol.41, issue.7, pp.4207-4218, 2013.
DOI : 10.1093/nar/gkt083

URL : https://hal.archives-ouvertes.fr/hal-00834323

T. T. Richardson, X. Wu, B. J. Keith, P. Heslop, A. C. Jones et al., Unwinding of primer-templates by archaeal family-B DNA polymerases in response to template-strand uracil, Nucleic Acids Research, vol.41, issue.4, pp.2466-2478, 2013.
DOI : 10.1093/nar/gks1364

L. Rossen, P. Norskov, K. Holmstrom, O. F. Rasmussen, P. J. Rothwell et al., Inhibition of PCR by components of food samples, microbial diagnostic assays and DNA-extraction solutions, International Journal of Food Microbiology, vol.17, issue.1, pp.37-45, 1992.
DOI : 10.1016/0168-1605(92)90017-W

C. Rouillon, G. Henneke, D. Flament, J. Querellou, and J. P. And-raffin, DNA Polymerase Switching on Homotrimeric PCNA at the Replication Fork of the Euryarchaea Pyrococcus abyssi, Journal of Molecular Biology, vol.369, issue.2, pp.343-355, 2007.
DOI : 10.1016/j.jmb.2007.03.054

URL : https://hal.archives-ouvertes.fr/hal-00617495

R. K. Saiki, S. Scharf, F. Faloona, K. B. Mullis, G. T. Horn et al., Enzymatic amplification of beta-globin genomic sequences and restriction site analysis for diagnosis of sickle cell anemia, Science, vol.230, issue.4732, pp.1350-1354, 1985.
DOI : 10.1126/science.2999980

C. Schrader, A. Schielke, L. Ellerbroek, J. , and R. , PCR inhibitors - occurrence, properties and removal, Journal of Applied Microbiology, vol.62, issue.5, 2012.
DOI : 10.1111/j.1365-2672.2012.05384.x

D. J. Sharkey, E. R. Scalice, K. G. Christy, . Jr, S. M. Atwood et al., Antibodies as Thermolabile Switches: High Temperature Triggering for the Polymerase Chain Reaction, Bio/Technology, vol.39, issue.5, pp.506-509, 1038.
DOI : 10.1016/0141-0229(91)90206-P

Y. Shen, K. Musti, M. Hiramoto, H. Kikuchi, Y. Kawarabayashi et al., Invariant Asp-1122 and Asp-1124 are essential residues for polymerization catalysis of family D DNA polymerase from Pyrococcus horikoshii Effect of primer mismatch, annealing temperature and PCR cycle number on 16S rRNA gene-targetting bacterial community analysis, J. Biol. Chem. FEMS Microbiol. Ecol, vol.276, issue.60, pp.27376-27383, 2001.

M. Takagi, M. Nishioka, H. Kakihara, M. Kitabayashi, H. Inoue et al., Characterization of DNA polymerase from Pyrococcus sp. strain KOD1 and its application to PCR, Appl. Environ. Microbiol, vol.63, pp.4504-4510, 1997.

K. Terpe, Overview of thermostable DNA polymerases for classical PCR applications: from molecular and biochemical fundamentals to commercial systems, Applied Microbiology and Biotechnology, vol.9, issue.24, pp.10243-10254, 2013.
DOI : 10.1007/s00253-013-5290-2

Y. L. Tsai and B. H. Olson, Rapid method for separation of bacterial DNA from humic substances in sediments for polymerase chain reaction, Appl. Environ. Microbiol, vol.58, pp.2292-2295, 1992.

T. Uemori, Y. Sato, I. Kato, H. Doi, and Y. Ishino, : gene cloning, expression, and characterization, Genes to Cells, vol.2, issue.8, pp.499-512, 1997.
DOI : 10.1046/j.1365-2443.1997.1380336.x

R. A. Van-oorschot, K. N. Ballantyne, M. , and R. J. , Forensic trace DNA: a review, Investigative Genetics, vol.1, issue.1, pp.2041-2223, 2010.
DOI : 10.1186/2041-2223-1-14

Y. Wang, D. E. Prosen, L. Mei, J. C. Sullivan, M. Finney et al., A novel strategy to engineer DNA polymerases for enhanced processivity and improved performance in vitro, Nucleic Acids Research, vol.32, issue.3, pp.1197-1207, 2004.
DOI : 10.1093/nar/gkh271

I. G. Wilson, Inhibition and facilitation of nucleic acid amplification, Appl. Environ. Microbiol, vol.63, pp.3741-3751, 1997.