A. Aguilera, B. Gomez-gonzalez, A. Bacolla, W. , and R. D. , Genome instability: a mechanistic view of its causes and consequences, Nature Reviews Genetics, vol.16, issue.3, pp.204-217, 2008.
DOI : 10.1038/nrg2268

E. R. Barry and S. D. Bell, DNA Replication in the Archaea, Microbiology and Molecular Biology Reviews, vol.70, issue.4, pp.876-887, 2006.
DOI : 10.1128/MMBR.00029-06

C. D. Bayliss, D. Field, and E. R. Moxon, The simple sequence contingency loci of Haemophilus influenzae and Neisseria meningitidis, Journal of Clinical Investigation, vol.107, issue.6, pp.657-662, 2001.
DOI : 10.1172/JCI12557

H. Bierne, S. D. Ehrlich, M. , and B. , The replication termination signal terB of the Escherichia coli chromosome is a deletion hot spot, EMBO J, vol.10, pp.2699-2705, 1991.

P. Bierne, S. D. Ehrlich, M. , and B. , Deletions at stalled replication forks occur by two different pathways, The EMBO Journal, vol.16, issue.11, 1996.
DOI : 10.1093/emboj/16.11.3332
URL : http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1169949

D. Canceill and S. D. Ehrlich, Copy-choice recombination mediated by DNA polymerase III holoenzyme from Escherichia coli., Proceedings of the National Academy of Sciences, vol.93, issue.13, pp.6647-6652, 1996.
DOI : 10.1073/pnas.93.13.6647

D. Canceill, E. Viguera, and S. D. Ehrlich, Replication Slippage of Different DNA Polymerases Is Inversely Related to Their Strand Displacement Efficiency, Journal of Biological Chemistry, vol.274, issue.39, pp.27481-27490, 1999.
DOI : 10.1074/jbc.274.39.27481

B. Castrec, C. Rouillon, G. Henneke, D. Flament, J. Querellou et al., Binding to PCNA in Euryarchaeal DNA Replication Requires Two PIP Motifs for DNA Polymerase D and One PIP Motif for DNA Polymerase B, Journal of Molecular Biology, vol.394, issue.2, pp.209-218, 2009.
DOI : 10.1016/j.jmb.2009.09.044
URL : https://hal.archives-ouvertes.fr/hal-00609928

J. Cline, J. Braman, and H. Hogrefe, PCR fidelity of pfu DNA polymerase and other thermostable DNA polymerases, Nucleic Acids Research, vol.24, issue.18, 1996.
DOI : 10.1093/nar/24.18.3546

E. Alencon, M. Petranovic, B. Michel, P. Noirot, A. Aucouturier et al., Copy-choice illegitimate DNA recombination revisited, EMBO J, vol.13, pp.2725-2734, 1994.

K. A. Eckert and T. A. Kunkel, High fidelity DNA synthesis by the Thermus aquaticus DNA polymerase, Nucl. Acids Res, vol.18, 1990.

M. J. Engler, R. L. Lechner, and C. C. Richardson, Two forms of the DNA polymerase of bacteriophage T7, J. Biol. Chem, vol.258, pp.11165-11173, 1983.

V. V. Feschenko and S. T. Lovett, Slipped misalignment mechanisms of deletion formation: analysis of deletion endpoints, Journal of Molecular Biology, vol.276, issue.3, pp.559-569, 1997.
DOI : 10.1006/jmbi.1997.1566

R. Gemayel, M. D. Vinces, M. Legendre, and K. J. Verstrepen, Variable Tandem Repeats Accelerate Evolution of Coding and Regulatory Sequences, Annual Review of Genetics, vol.44, issue.1, pp.445-477, 2010.
DOI : 10.1146/annurev-genet-072610-155046

D. Greenstein, K. Horiuchi, Y. Gueguen, J. L. Rolland, O. Lecompte et al., Interaction between the replication origin and the initiator protein of the filamentous phage f1 Binding occurs in two steps Characterization of two DNA polymerases from the hyperthermophilic euryarchaeon Pyrococcus abyssi, J. Mol. Biol. Eur. J. Biochem, vol.19787, issue.268, pp.157-174, 1987.

G. Henneke, reconstitution of RNA primer removal in Archaea reveals the existence of two pathways, Biochemical Journal, vol.160, issue.2, pp.271-280, 2012.
DOI : 10.1093/jmcb/mjq048
URL : https://hal.archives-ouvertes.fr/hal-00773151

G. Henneke, Y. Gueguen, D. Flament, P. Azam, J. Querellou et al., Replication Factor C from the Hyperthermophilic Archaeon Pyrococcus abyssi Does Not Need ATP Hydrolysis for Clamp-loading and Contains a Functionally Conserved RFC PCNA-binding Domain, Journal of Molecular Biology, vol.323, issue.5, pp.795-810, 2002.
DOI : 10.1016/S0022-2836(02)01028-8

Y. Ishino, K. Komori, I. K. Cann, and Y. Koga, A novel DNA polymerase family found in Archaea, J. Bacteriol, vol.180, pp.2232-2236, 1998.

J. C. Kim and S. M. Mirkin, The balancing act of DNA repeat expansions, Current Opinion in Genetics & Development, vol.23, issue.3, 2013.
DOI : 10.1016/j.gde.2013.04.009

L. C. Kroutil, K. Register, K. Bebenek, and T. A. Kunkel, Exonucleolytic Proofreading during Replication of Repetitive DNA, Biochemistry, vol.35, issue.3, pp.1046-1053, 1996.
DOI : 10.1021/bi952178h

T. A. Kunkel and K. Bebenek, DNA Replication Fidelity, Annual Review of Biochemistry, vol.69, issue.1, pp.497-529, 2000.
DOI : 10.1146/annurev.biochem.69.1.497

R. L. Lechner, M. J. Engler, and C. C. Richardson, Characterization of strand displacement synthesis catalyzed by bacteriophage T7 DNA polymerase, J. Biol. Chem, vol.258, pp.11174-11184, 1983.

F. J. López-de-saro, Regulation of Interactions with Sliding Clamps During DNA Replication and Repair, Current Genomics, vol.10, issue.3, pp.206-215, 2009.
DOI : 10.2174/138920209788185234

S. T. Lovett, Encoded errors: mutations and rearrangements mediated by misalignment at repetitive DNA sequences, Molecular Microbiology, vol.307, issue.5, pp.1243-1253, 2004.
DOI : 10.1111/j.1365-2958.2004.04076.x

T. Lyons-darden and M. Topal, Effects of temperature, Mg2+ concentration and mismatches on triplet-repeat expansion during DNA replication in vitro, Nucleic Acids Research, vol.27, issue.11, 1999.
DOI : 10.1093/nar/27.11.2235

C. S. Madsen, S. C. Ghivizzani, and W. W. Hauswirth, In vivo and in vitro evidence for slipped mispairing in mammalian mitochondria., Proc. Natl. Acad, 1993.
DOI : 10.1073/pnas.90.16.7671

C. T. Mcmurray, DNA secondary structure: A common and causative factor for expansion in human disease, Proceedings of the National Academy of Sciences, vol.96, issue.5, pp.1823-1825, 1999.
DOI : 10.1073/pnas.96.5.1823

B. Michel, Replication fork arrest and DNA recombination, Trends in Biochemical Sciences, vol.25, issue.4, pp.173-178, 2000.
DOI : 10.1016/S0968-0004(00)01560-7

S. M. Mirkin, Expandable DNA repeats and human disease, Nature, vol.27, issue.7147, 2007.
DOI : 10.1038/nature05977

E. R. Moxon, P. B. Rainey, M. A. Nowak, and R. E. Lenski, Adaptive evolution of highly mutable loci in pathogenic bacteria, Current Biology, vol.4, issue.1, pp.24-33, 1994.
DOI : 10.1016/S0960-9822(00)00005-1

M. Donnell, L. Langston, B. A. Stillman, G. Villani, S. L-'haridon et al., Intrinsic properties of the two replicative DNA polymerases of Pyrococcus abyssi in replicating abasic sites: possible role in DNA damage tolerance? Repeat instability: mechanisms of dynamic mutations Enhancement of DNA, cDNA synthesis and fidelity at high temperatures by a dimeric singlestranded DNA-binding protein Global phylogenomic analysis disentangles the complex evolutionary history of DNA replication in Archaea Dynamic mutations: a new class of mutations causing human disease, Principles and concepts of DNA replication in bacteria, archaea, and eukarya. Cold Spring Harb DNA Polymerase Switching on Homotrimeric PCNA at the Replication Fork of the Euryarchaea Pyrococcus abyssi, pp.746-761, 1992.

G. M. Samadashwily, R. Gordana, and S. M. Mirkin, Trinucleotide repeats affect DNA replication in vivo, Nature Genetics, vol.12, issue.3, pp.298-304, 1997.
DOI : 10.1016/S0092-8674(00)81846-2

S. N. Shah, S. E. Hile, and K. A. Eckert, Defective Mismatch Repair, Microsatellite Mutation Bias, and Variability in Clinical Cancer Phenotypes, Cancer Research, vol.70, issue.2, pp.431-435, 2010.
DOI : 10.1158/0008-5472.CAN-09-3049

R. R. Sinden, M. J. Pytlos-sinden, and V. N. Potaman, Slipped strand DNA structures, Frontiers in Bioscience, vol.12, issue.12, pp.4788-4799, 2007.
DOI : 10.2741/2427

M. S. Soengas, J. A. Esteban, J. M. Lazaro, A. Bernard, M. A. Blasco et al., Site-directed mutagenesis at the Exo III motif of phi 29 DNA polymerase; overlapping structural domains for the 3'-5' exonuclease and strand-displacement activities, EMBO J, vol.11, pp.4227-4237, 1992.

H. T. Tran, N. P. Degtyareva, N. N. Koloteva, A. Sugino, H. Masumoto et al., Replication slippage between distant short repeats in Saccharomyces cerevisiae depends on the direction of replication and the RAD50 and RAD52 genes., Molecular and Cellular Biology, vol.15, issue.10, pp.5607-5617, 1995.
DOI : 10.1128/MCB.15.10.5607

T. Q. Trinh and R. R. Sinden, The influence of primary and secondary DNA structure in deletion and duplication between direct repeats in Escherichia coli, Genetics, vol.134, pp.409-422, 1993.

E. Viguera, D. Canceill, and S. D. Ehrlich, Replication slippage involves DNA polymerase pausing and dissociation, The EMBO Journal, vol.20, issue.10, 2001.
DOI : 10.1093/emboj/20.10.2587
URL : http://www.ncbi.nlm.nih.gov/pmc/articles/PMC125466

E. Viguera, D. Canceill, and S. D. Ehrlich, In vitro replication slippage by DNA polymerases from thermophilic organisms, Journal of Molecular Biology, vol.312, issue.2, pp.323-3334943, 2001.
DOI : 10.1006/jmbi.2001.4943