H. Beadman, R. Willows, and M. Kaiser, Potential applications of mussel modelling, Helgoland Marine Research, vol.56, issue.1, pp.76-85, 2002.
DOI : 10.1007/s10152-001-0092-9

H. Van-der-veer, J. Cardoso, and J. Van-der-meer, The estimation of DEB parameters for various Northeast Atlantic bivalve species, Journal of Sea Research, vol.56, issue.2, pp.107-124, 2006.
DOI : 10.1016/j.seares.2006.03.005

T. Troost, J. Wijsman, S. Saraiva, and V. Freitas, Modeling shellfish growth with Dynamic Energy Budget (DEB) models: an application for cockles and mussels in the Oosterschelde (SW Netherlands), Phil Trans R Soc B, issue.365, pp.3567-3577, 2010.

Y. Thomas, J. Mazurié, M. Alunno-bruscia, C. Bacher, and J. Bouget, Modelling spatio-temporal variability of Mytilus edulis (L.) growth by forcing a dynamic energy budget model with satellite-derived environmental data, Journal of Sea Research, vol.66, issue.4, pp.308-317, 2011.
DOI : 10.1016/j.seares.2011.04.015

R. Rosland, Ø. Strand, M. Alunno-bruscia, C. Bacher, and T. Strohmeier, Applying Dynamic Energy Budget (DEB) theory to simulate growth and bioenergetics of blue mussels under low seston conditions, J Sea Res, vol.62, pp.2-3, 2009.

P. Duarte, M. Fernández-reiriz, and U. Labarta, Modelling mussel growth in ecosystems with low suspended matter loads using a Dynamic Energy Budget approach, Journal of Sea Research, vol.67, issue.1, pp.44-57, 2012.
DOI : 10.1016/j.seares.2011.09.002

S. Saraiva, J. Van-der-meer, S. Kooijman, R. Witbaard, and C. Philippart, Validation of a Dynamic Energy Budget (DEB) model for the blue mussel Mytilus edulis, Marine Ecology Progress Series, vol.463, pp.141-158, 2012.
DOI : 10.3354/meps09801

T. Dabrowski, K. Lyons, M. Curé, A. Berry, and G. Nolan, Numerical modelling of spatio-temporal variability of growth of Mytilus edulis (L.) and influence of its cultivation on ecosystem functioning, Journal of Sea Research, vol.76, pp.5-21, 2013.
DOI : 10.1016/j.seares.2012.10.012

K. Grangeré, A. Ménesguen, S. Lefebvre, C. Bacher, and S. Pouvreau, Modelling the influence of environmental factors on the physiological status of the Pacific oyster Crassostrea gigas in an estuarine embayment, 2009.

Y. Bourlès, M. Alunno-bruscia, S. Pouvreau, G. Tollu, and D. Leguay, Modelling growth and reproduction of the Pacific oyster Crassostrea gigas: Advances in the oyster-DEB model through application to a coastal pond, Journal of Sea Research, vol.62, issue.2-3, pp.2-3, 2009.
DOI : 10.1016/j.seares.2009.03.002

A. Handå, M. Alver, C. Edvardsen, S. Halstensen, and A. Olsen, Growth of farmed blue mussels (Mytilus edulis L.) in a Norwegian coastal area; comparison of food proxies by DEB modeling, Journal of Sea Research, vol.66, issue.4, pp.297-307, 2011.
DOI : 10.1016/j.seares.2011.05.005

S. Saraiva, J. Van-der-meer, S. Kooijman, and T. Sousa, DEB parameters estimation for Mytilus edulis, Journal of Sea Research, vol.66, issue.4, pp.289-296, 2011.
DOI : 10.1016/j.seares.2011.06.002

J. Widdows, P. Fieth, and C. Worrall, Relationships between seston, available food and feeding activity in the common mussel Mytilus edulis, Marine Biology, vol.22, issue.42, pp.195-207, 1979.
DOI : 10.1007/BF00394201

S. Bougrier, A. Hawkins, and M. Héral, Preingestive selection of different microalgal mixtures in Crassostrea gigas and Mytilus edulis, analysed by flow cytometry, Aquaculture, vol.150, issue.1-2, pp.123-134, 1997.
DOI : 10.1016/S0044-8486(96)01457-3

C. Saurel, J. Gascoigne, M. Palmer, and M. Kaiser, In situ mussel feeding behavior in relation to multiple environmental factors: Regulation through food concentration and tidal conditions, Limnology and Oceanography, vol.52, issue.5, pp.1919-1929, 2007.
DOI : 10.4319/lo.2007.52.5.1919

H. Riisgård, P. Egede, and I. Saavedra, : New Observations, with a Minireview of Current Knowledge, Journal of Marine Biology, vol.88, issue.1, pp.10-1155, 2011.
DOI : 10.1007/BF00397666

D. Pleissner, N. Eriksen, K. Lundgreen, and H. Riisgå-rd, , is Affected by Living Site and Species of Ingested Microalgae, ISRN Zoology, vol.7, issue.3, pp.10-5402902152, 2012.
DOI : 10.1016/S0044-8486(99)00219-7

N. Toupoint, L. Gilmore-solomon, F. Bourque, B. Myrand, and F. Pernet, larval supply and seston quality: effect on recruitment, Ecology, vol.93, issue.8, pp.1922-1934, 2012.
DOI : 10.1016/0022-0981(92)90205-O

T. Strohmeier, Ø. Strand, M. Alunno-bruscia, A. Duinker, and P. Cranford, Variability in particle retention efficiency by the mussel Mytilus edulis, Journal of Experimental Marine Biology and Ecology, vol.412, pp.96-102, 2012.
DOI : 10.1016/j.jembe.2011.11.006

G. Rouillon, G. Rivas, J. Ochoa, N. Navarro, and E. , Phytoplankton composition of the stomach contents of the mussel Mytilus edulis L. from two populations: comparison with its food supply, J Shellfish Res, vol.24, issue.1, pp.5-14, 2005.

A. Maloy, P. Nelle, S. Culloty, J. Slater, and C. Harrod, Identifying trophic variation in a marine suspension feeder: DNA- and stable isotope-based dietary analysis in Mytilus spp., Marine Biology, vol.52, issue.19, pp.479-490, 2013.
DOI : 10.1007/s00227-012-2105-4

F. Pernet, N. Malet, A. Pastoureaud, A. Vaquer, and C. Quéré, Marine diatoms sustain growth of bivalves in a Mediterranean lagoon, Journal of Sea Research, vol.68, pp.20-32, 2012.
DOI : 10.1016/j.seares.2011.11.004

V. Lauringson, J. Kotta, H. Orav-kotta, and K. Kaljurand, in a brackish nontidal environment, Marine Ecology, vol.82, issue.1, pp.56-66, 2014.
DOI : 10.1111/maec.12120

P. Rodhouse, C. Roden, G. Burnell, M. Hensey, and T. Mcmahon, Food resource, gametogenesis and growth of Mytilus edulis on the shore and in suspended culture: Killary Harbour, Ireland, Journal of the Marine Biological Association of the United Kingdom, vol.3, issue.03, pp.513-529, 1984.
DOI : 10.3354/meps009263

V. Freitas, J. Cardoso, S. Santos, J. Campos, and J. Drent, Reconstruction of food conditions for Northeast Atlantic bivalve species based on Dynamic Energy Budgets, Journal of Sea Research, vol.62, issue.2-3, pp.75-82, 2009.
DOI : 10.1016/j.seares.2009.07.004

J. Cardoso, J. Witte, and H. Van-der-veer, Intra- and interspecies comparison of energy flow in bivalve species in Dutch coastal waters by means of the Dynamic Energy Budget (DEB) theory, Journal of Sea Research, vol.56, issue.2, pp.182-197, 2006.
DOI : 10.1016/j.seares.2006.03.011

M. Ubertini, S. Lefebvre, A. Gangnery, K. Grangeré, L. Gendre et al., Spatial Variability of Benthic-Pelagic Coupling in an Estuary Ecosystem: Consequences for Microphytobenthos Resuspension Phenomenon, PLoS ONE, vol.7, issue.8, 2012.
DOI : 10.1371/journal.pone.0044155.t005

URL : https://hal.archives-ouvertes.fr/hal-00807556

F. Jouenne, S. Lefebvre, B. Véron, and Y. Lagadeuc, Biological and physicochemical factors controlling short-term variability in phytoplankton primary production and photosynthetic parameters in a macrotidal ecosystem (eastern English Channel), Estuarine, Coastal and Shelf Science, vol.65, issue.3, pp.421-439, 2005.
DOI : 10.1016/j.ecss.2005.05.023

URL : https://hal.archives-ouvertes.fr/hal-00014405

F. Jouenne, S. Lefebvre, B. Véron, and Y. Lagadeuc, Phytoplankton community structure and primary production in small intertidal estuarine-bay ecosystem (eastern English Channel, France), Marine Biology, vol.273, issue.5, pp.805-825, 2007.
DOI : 10.1007/s00227-006-0440-z

URL : https://hal.archives-ouvertes.fr/hal-00089992

B. Bayne and C. Worrall, Growth and Production of Mussels Mytilus edulis from Two Populations, Marine Ecology Progress Series, vol.3, pp.317-328, 1980.
DOI : 10.3354/meps003317

A. Aminot and R. Kérouel, Dosage automatique des nutriments dans les eaux marines, 2007.

A. Aminot and R. Kérouel, Hydrologie des e ´cosystèmes marins. Paramètres et analyses, p.336, 2004.

H. Utermöhl, Zur vervolkommung der quantativen phytoplankton methodik, Int Ver Theoret Angew Limnol, vol.9, pp.1-38, 1958.

D. Vaulot, C. Courties, and F. Partensky, A simple method to preserve oceanic phytoplankton for flow cytometric analyses, Cytometry, vol.67, issue.5, pp.629-635, 1989.
DOI : 10.1002/cyto.990100519

D. Marie, F. Partensky, S. Jacquet, and D. Vaulot, Enumeration and cell cycle analysis of natural populations of marine picoplankton by flow cytometry using the nucleic acid stain SyBR Green I, Appl Environ Microbiol, vol.63, pp.186-193, 1997.

M. Sprung, Reproduction and fecundity of the mussel Mytilus edulis at Helgoland (North Sea), Helgol Mar Res, vol.36, pp.243-255, 1983.

J. Flye-sainte-marie, M. Alunno-bruscia, A. Gangnery, E. Rannou, and R. Rosland, Individual mussel growth model using DEB (Dynamic Energy Budget) theory: revisiting the DEB parameter values for Mytilus edulis, Aquaculture Europe, pp.14-17, 2009.

W. Thacker, The role of the Hessian matrix in fitting models to measurements, Journal of Geophysical Research, vol.93, issue.C5, pp.6177-6196, 1989.
DOI : 10.1029/JC094iC05p06177

K. Fenner, M. Losch, J. Schröter, and M. Wenzel, Testing a marine ecosystem model: sensitivity analysis and parameter optimization, Journal of Marine Systems, vol.28, issue.1-2, pp.45-63, 2001.
DOI : 10.1016/S0924-7963(00)00083-X

B. Faugeras, M. Lévy, L. Mémery, J. Verron, and J. Blum, Can biogeochemical fluxes be recovered from nitrate and chlorophyll data? A case study assimilating data in the Northwestern Mediterranean Sea at the JGOFS-DYFAMED station, Journal of Marine Systems, vol.40, issue.41, pp.99-125, 2003.
DOI : 10.1016/S0924-7963(03)00015-0

URL : https://hal.archives-ouvertes.fr/hal-00230148

S. Dueri, B. Faugeras, and M. O. , Modelling the skipjack tuna dynamics in the Indian Ocean with APECOSM-E ??? Part 2: Parameter estimation and sensitivity analysis, Ecological Modelling, vol.245, pp.55-64, 2012.
DOI : 10.1016/j.ecolmodel.2012.02.008

URL : https://hal.archives-ouvertes.fr/hal-00872779

N. Leonardos and I. Lucas, The nutritional value of algae grown under different culture conditions for Mytilus edulis L. larvae, Aquaculture, vol.182, issue.3-4, pp.301-315, 2000.
DOI : 10.1016/S0044-8486(99)00269-0

R. Horner, A taxonomic guide to some common marine phytoplankton, Bristol: Biopress, p.195, 2002.

L. Guilloux, F. Rigaut-jalabert, F. Jouenne, S. Ristori, and M. Viprey, An annotated checklist of Marine Phytoplankton taxa at the SOMLIT-Astan time series off Roscoff (Western English Channel, France): data collected from, Cah Biol Mar, vol.54, pp.247-256, 2000.
URL : https://hal.archives-ouvertes.fr/hal-01253993

K. Leblanc, J. Aristegui, A. L. Assmy, P. Beker, and B. , A global diatom database ??? abundance, biovolume and biomass in the world ocean, Earth System Science Data, vol.4, issue.1, pp.149-165, 2012.
DOI : 10.5194/essd-4-149-2012

URL : https://hal.archives-ouvertes.fr/hal-00761329

J. Sun and D. Liu, Geometric models for calculating cell biovolume and surface area for phytoplankton, Journal of Plankton Research, vol.25, issue.11, pp.1331-1346, 2003.
DOI : 10.1093/plankt/fbg096

H. Marshall and L. Burchardt, Phytoplankton Composition Within the Tidal Freshwater-Oligohaline Regions of the Rappahannock and Pamunkey Rivers in Virginia, Castanea, vol.69, issue.4, pp.272-283, 2004.
DOI : 10.2179/0008-7475(2004)069<0272:PCWTTF>2.0.CO;2

H. Marshall, R. Lacouture, C. Buchanan, and J. Johnson, Phytoplankton assemblages associated with water quality and salinity regions in Chesapeake Bay, USA, Estuarine, Coastal and Shelf Science, vol.69, issue.1-2, pp.10-18, 2006.
DOI : 10.1016/j.ecss.2006.03.019

L. Brand, The salinity tolerance of forty-six marine phytoplankton isolates, Estuarine, Coastal and Shelf Science, vol.18, issue.5, pp.543-556, 1984.
DOI : 10.1016/0272-7714(84)90089-1

H. Jiang, Diatoms from the surface sediments of the Skagerrak and the Kattegat and their relationship to the spatial changes of environmental variables, Journal of Biogeography, vol.23, issue.2, pp.129-137, 1996.
DOI : 10.1046/j.1365-2699.1996.00965.x

A. De-zwaan and D. Zandee, Body distribution and seasonal changes in the glycogen content of the common sea musselMytilus edulis, Comparative Biochemistry and Physiology Part A: Physiology, vol.43, issue.1, pp.53-58, 1972.
DOI : 10.1016/0300-9629(72)90468-9

A. Smaal and A. Vonck, Seasonal variation in C, N and P budgets and tissue composition of the mussel Mytilus edulis, Marine Ecology Progress Series, vol.153, pp.167-179, 1997.
DOI : 10.3354/meps153167

P. Garen, S. Robert, and S. Bougrier, Comparison of growth of mussel, Mytilus edulis, on longline, pole and bottom culture sites in the Pertuis Breton, France, Aquaculture, vol.232, issue.1-4, pp.511-524, 2004.
DOI : 10.1016/S0044-8486(03)00535-0

P. Dare and D. Edwards, Seasonal changes in flesh weight and biochemical composition of mussels (Mytilus edulis L.) in the Conwy Estuary, North Wales, Journal of Experimental Marine Biology and Ecology, vol.18, issue.2, pp.89-97, 1975.
DOI : 10.1016/0022-0981(75)90066-0

T. Hilbish, Growth trajectories of shell and soft tissue in bivalves: Seasonal variation in Mytilus edulis L., Journal of Experimental Marine Biology and Ecology, vol.96, issue.2, pp.103-113, 1986.
DOI : 10.1016/0022-0981(86)90236-4

N. Kautsky, Quantitative studies on gonad cycle, fecundity, reproductive output and recruitment in a baltic Mytilus edulis population, Marine Biology, vol.67, issue.5, pp.143-160, 1982.
DOI : 10.1007/BF00397601

N. Tanaka, M. Monaghan, and D. Rye, Contribution of metabolic carbon to mollusc and barnacle shell carbonate, Nature, vol.22, issue.6062, pp.520-523, 1986.
DOI : 10.1038/320520a0

D. Gillikin, A. Lorrain, S. Bouillon, P. Willenz, and F. Dehairs, Stable carbon isotopic composition of Mytilus edulis shells: relation to metabolism, salinity, ??13CDIC and phytoplankton, Organic Geochemistry, vol.37, issue.10, pp.1371-1382, 2006.
DOI : 10.1016/j.orggeochem.2006.03.008

A. Palmer, Do carbonate skeletons limit the rate of body growth?, Nature, vol.16, issue.5819, pp.150-152, 1981.
DOI : 10.1038/292150a0

M. Behrenfeld, K. Halsey, and A. Milligan, Evolved physiological responses of phytoplankton to their integrated growth environment, Philosophical Transactions of the Royal Society B: Biological Sciences, vol.51, issue.5, pp.2687-2703, 2008.
DOI : 10.1104/pp.64.5.828

M. Bracken, B. Menge, M. Foley, C. Sorte, J. Lubchenco et al., Mussel selectivity for high-quality food drives carbon inputs into open-coast intertidal ecosystems, Marine Ecology Progress Series, vol.459, pp.53-62, 2012.
DOI : 10.3354/meps09764

P. Cranford, B. Hargrave, and W. Li, No mussel is an island, ICES insight, vol.46, pp.44-49, 2009.

A. Smaal and F. Twisk, Filtration and absorption of Phaeocystis cf. globosa by the mussel Mytilus edulis L., Journal of Experimental Marine Biology and Ecology, vol.209, issue.1-2, pp.33-46, 1997.
DOI : 10.1016/S0022-0981(96)02695-0

S. Lefebvre, C. Harma, and J. Blin, Trophic typology of coastal ecosystems based on ??13C and ??15N ratios in an opportunistic suspension feeder, Marine Ecology Progress Series, vol.390, pp.27-37, 2009.
DOI : 10.3354/meps08187

URL : https://hal.archives-ouvertes.fr/hal-00480681

A. Pronker, N. Nevejan, F. Peene, P. Geisjen, and P. Sorgeloos, Hatchery broodstock conditioning of the blue mussel Mytilus edulis (Linnaeus 1758). Part I. Impact of different micro-algae mixtures on broodstock performance, Aquaculture International, vol.39, issue.2, pp.297-307, 2007.
DOI : 10.1007/s10499-007-9143-9

A. Trottet, S. Roy, E. Tamigneaux, C. Lovejoy, and R. Tremblay, Impact of suspended mussels (Mytilus edulis L.) on plankton communities in a Magdalen Islands lagoon (Qu??bec, Canada): A mesocosm approach, Journal of Experimental Marine Biology and Ecology, vol.365, issue.2, pp.103-115, 2008.
DOI : 10.1016/j.jembe.2008.08.001

T. Strömgren and C. Cary, Growth in length of Mytilus edulis L. fed on different algal diets, Journal of Experimental Marine Biology and Ecology, vol.76, issue.1, p.2334, 1984.
DOI : 10.1016/0022-0981(84)90014-5

J. Fearman, C. Bolch, and N. Moltschaniwskyj, : The Influence of Diet Quality, Journal of Shellfish Research, vol.28, issue.2, pp.305-312, 2009.
DOI : 10.2983/035.028.0212

S. Masquelier, E. Foulon, F. Jouenne, M. Ferréol, and C. Brussaard, Distribution of eukaryotic plankton in the English Channel and the North Sea in summer, Journal of Sea Research, vol.66, issue.2, pp.111-122, 2011.
DOI : 10.1016/j.seares.2011.05.004

URL : https://hal.archives-ouvertes.fr/hal-01254015

C. Lehane and J. Davenport, A 15-month study of zooplankton ingestion by farmed mussels (Mytilus edulis) in Bantry Bay, Southwest Ireland, Estuarine, Coastal and Shelf Science, vol.67, issue.4, pp.645-652, 2006.
DOI : 10.1016/j.ecss.2005.12.015

B. Bayne, Physiological changes in Mytilus edulis L. induced by temperature and nutritive stress, Journal of the Marine Biological Association of the United Kingdom, vol.51, issue.01, pp.39-58, 1973.
DOI : 10.2307/1540124

J. Toro, R. Thompson, and D. Innes, Reproductive isolation and reproductive output in two sympatric mussel species (Mytilus edulis, M. trossulus) and their hybrids from Newfoundland, Marine Biology, vol.91, issue.5, pp.897-909, 2002.
DOI : 10.1007/s00227-002-0897-3

S. Doherty, D. Brophy, and E. Gosling, Synchronous reproduction may facilitate introgression in a hybrid mussel (Mytilus) population, Journal of Experimental Marine Biology and Ecology, vol.378, issue.1-2, pp.1-7, 2009.
DOI : 10.1016/j.jembe.2009.04.022

J. Cardoso, R. Dekker, J. Witte, and H. Van-der-veer, Is reproductive failure responsible for reduced recruitment of intertidal Mytilus edulis L. in the western Dutch Wadden Sea?, Mar Biodivers, vol.37, issue.2, pp.83-92, 2007.

R. Newell, T. Hilbish, R. Koehn, and C. Newell, L. (BIVALVIA, MYTILIDAE) FROM LOCALITIES ON THE EAST COAST OF THE UNITED STATES, The Biological Bulletin, vol.162, issue.3, pp.299-310, 1982.
DOI : 10.2307/1540985

G. Thorarinsdóttir and K. Gunnarsson, Reproductive cycles of Mytilus edulis L. on the west and east coasts of Iceland, Polar Research, vol.2, issue.2, pp.217-223, 2003.
DOI : 10.3402/polar.v22i2.6456

J. Hagger, D. Lowe, A. Dissanayake, M. Jones, and T. Galloway, The influence of seasonality on biomarker responses in Mytilus edulis, Ecotoxicology, vol.399, issue.Suppl 12, pp.953-962, 2010.
DOI : 10.1007/s10646-010-0477-0