D. Prangishvili and R. A. Garrett, Exceptionally diverse morphotypes and genomes of crenarchaeal hyperthermophilic viruses, Biochemical Society Transactions, issue.22, pp.204-208, 2004.

T. Mochizuki, Y. Sako, and D. Prangishvili, Provirus Induction in Hyperthermophilic Archaea: Characterization of Aeropyrum pernix Spindle-Shaped Virus 1 and Aeropyrum pernix Ovoid Virus 1, Journal of Bacteriology, vol.193, issue.19, pp.5412-5419, 2011.
DOI : 10.1128/JB.05101-11

D. Prangishvili, R. A. Garrett, and E. V. Koonin, Evolutionary genomics of archaeal viruses: Unique viral genomes in the third domain of life, Virus Research, vol.117, issue.1, pp.52-67, 2006.
DOI : 10.1016/j.virusres.2006.01.007

F. Eiserling, A. Pushkin, M. Gingery, and G. Bertani, Bacteriophage-like particles associated with the gene transfer agent of Methanococcus voltae PS, Journal of General Virology, vol.80, issue.12, pp.3305-3308, 1999.
DOI : 10.1099/0022-1317-80-12-3305

H. W. Ackermann and D. Prangishvili, Prokaryote viruses studied by electron microscopy, Archives of Virology, vol.18, issue.7, pp.1843-1849, 2012.
DOI : 10.1007/s00705-012-1383-y

C. Bath, T. Cukalac, K. Porter, and M. L. Dyall-smith, His1 and His2 are distantly related, spindle-shaped haloviruses belonging to the novel virus group, Salterprovirus, Virology, vol.350, issue.1, pp.228-239, 2006.
DOI : 10.1016/j.virol.2006.02.005

C. Bath and M. L. , Dyall-smith His1, an archaeal virus of the Fuselloviridae family that infects Haloarcula hispanica, Journal of Virology, vol.72, issue.11, pp.9392-9395, 1998.

P. R-e-d-d-e-r, X. P-e-n-g, and K. , Four newly isolated fuselloviruses from extreme geothermal environments reveal unusual morphologies and a possible interviral recombination mechanism, Environmental Microbiology, vol.11, issue.11, pp.2849-2862, 2009.

C. Geslin, M. Le-romancer, G. Erauso, M. Gaillard, G. Perrot et al., PAV1, the First Virus-Like Particle Isolated from a Hyperthermophilic Euryarchaeote, "Pyrococcus abyssi", Journal of Bacteriology, vol.185, issue.13, pp.3888-3894, 2003.
DOI : 10.1128/JB.185.13.3888-3894.2003

A. Gorlas, E. V. Koonin, N. Bienvenu, D. Prieur, and C. Geslin, TPV1, the first virus isolated from the hyperthermophilic genus Thermococcus, Environmental Microbiology, vol.10, issue.2, pp.503-516, 2012.
DOI : 10.1111/j.1462-2920.2011.02662.x
URL : https://hal.archives-ouvertes.fr/hal-00775875

A. Gorlas and C. Geslin, A simple procedure to determine the infectivity and host range of viruses infecting anaerobic and hyperthermophilic microorganisms, Extremophiles, vol.4, issue.2, 2013.
DOI : 10.1007/s00792-013-0513-0
URL : https://hal.archives-ouvertes.fr/hal-00785226

C. Geslin, M. Gaillard, and D. Flament, Analysis of the First Genome of a Hyperthermophilic Marine Virus-Like Particle, PAV1, Isolated from Pyrococcus abyssi, Journal of Bacteriology, vol.189, issue.12, pp.4510-4519, 2007.
DOI : 10.1128/JB.01896-06
URL : https://hal.archives-ouvertes.fr/hal-00616744

M. Krupovic, M. Gonnet, W. B. Hania, R. Forterre, and G. Erauso, Insights into Dynamics of Mobile Genetic Elements in Hyperthermophilic Environments from Five New Thermococcus Plasmids, PLoS ONE, vol.21, issue.2, p.49044, 2013.
DOI : 10.1371/journal.pone.0049044.s012
URL : https://hal.archives-ouvertes.fr/hal-00748527

J. E. Johnson, Structure of an archaeal virus capsid protein reveals a common ancestry to eukaryotic and bacterial viruses, Proceedings of the National Academy of Sciences of the United States of America, vol.102, issue.52, pp.18944-18949, 2005.

E. T. L-a-r-s-o-n, D. R-e-i-t-e-r, and M. , Structure of A197 from Sulfolobus turreted icosahedral virus: a crenarchaeal viral glycosyltransferase exhibiting the GT-A fold, Journal of Virology, vol.80, issue.15, pp.7636-7644, 2006.

J. Keller, N. Leulliot, and B. Collinet, Crystal structure of AFV1-102, a protein from the acidianus ilamentous virus 1, Protein Science, vol.18, issue.4, pp.845-849, 2009.

A. Goulet, M. Pina, and P. Redder, ORF157 from the Archaeal Virus Acidianus Filamentous Virus 1 Defines a New Class of Nuclease, Journal of Virology, vol.84, issue.10, pp.5025-5031, 2010.
DOI : 10.1128/JVI.01664-09

J. C. Whisstock and A. M. Lesk, Prediction of protein function from protein sequence and structure, Quarterly Reviews of Biophysics, vol.36, issue.3, pp.307-340, 2003.
DOI : 10.1017/S0033583503003901

N. Peixeiro, J. Keller, and B. Collinet, Structure and Function of AvtR, a Novel Transcriptional Regulator from a Hyperthermophilic Archaeal Lipothrixvirus, Journal of Virology, vol.87, issue.1, pp.124-136, 2013.
DOI : 10.1128/JVI.01306-12
URL : https://hal.archives-ouvertes.fr/hal-00766648

S. Hirose, K. Shimizu, S. Kanai, Y. Kuroda, and T. Noguchi, POODLE-L: a two-level SVM prediction system for reliably predicting long disordered regions, Bioinformatics, vol.23, issue.16, pp.2046-2053, 2007.
DOI : 10.1093/bioinformatics/btm302

M. Krupovi? and D. H. Bamford, Archaeal proviruses TKV4 and MVV extend the PRD1-adenovirus lineage to the phylum Euryarchaeota, Virology, vol.375, issue.1, pp.292-300, 2008.
DOI : 10.1016/j.virol.2008.01.043

S. T. Arold, M. K. Hoellerer, and M. E. Noble, The Structural Basis of Localization and Signaling by the Focal Adhesion Targeting Domain, Structure, vol.10, issue.3, pp.319-327, 2002.
DOI : 10.1016/S0969-2126(02)00717-7

E. Papagrigoriou, A. R. Gingras, and I. L. Barsukov, Activation of a vinculin-binding site in the talin rod involves rearrangement of a five-helix bundle, The EMBO Journal, vol.125, issue.15, pp.2942-2951, 2004.
DOI : 10.1074/JBC.M108587200

P. D. Adams, K. Gopal, and R. W. Grosse-kunstleve, software for automated crystallographic structure determination, Journal of Synchrotron Radiation, vol.11, issue.1, pp.53-55, 2004.
DOI : 10.1107/S0909049503024130

C. Vonrhein, E. Blanc, P. Roversi, and G. Bricogne, Automated Structure Solution With autoSHARP, Methods in Molecular Biology, vol.364, pp.215-230, 2007.
DOI : 10.1385/1-59745-266-1:215

R. J. Morris, A. Perrakis, and V. S. Lamzin, ARP???wARP and Automatic Interpretation of Protein Electron Density Maps, Methods in Enzymology, vol.374, pp.229-244, 2003.
DOI : 10.1016/S0076-6879(03)74011-7

T. A. Jones, Interactive electron-density map interpretation: from INTER to O, Acta Crystallographica Section Dwww.hindawi.com Enzyme Research, vol.0, issue.12, pp.2115-2125, 2004.