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An assessment of environmental metabarcoding protocols aiming at favoring contemporary biodiversity in inventories of deep-sea communities

Miriam Brandt , Blandine Trouche , Nicolas Henry , Cathy Liautard-Haag , Lois Maignien , et al.
Frontiers in Marine Science, 2020, 7, pp.234. ⟨10.3389/fmars.2020.00234⟩
Article dans une revue hal-03410860v1
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Microbial community structure in hadal sediments: high similarity along trench axes and strong changes along redox gradients.

Clemens Schauberger , Ronnie N. Glud , Bela Hausmann , Blandine Trouche , Lois Maignien , et al.
The International Society of Microbiologial Ecology Journal, In press, ⟨10.1038/s41396-021-01021-w⟩
Article dans une revue hal-03415694v1
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Metagenome-assembled genomes of deep-sea sediments: changes in microbial functional potential lag behind redox transitions

Clemens Schauberger , Bo Thamdrup , Clarisse Lemonnier , Blandine Trouche , Julie Poulain , et al.
ISME Communications, 2024, 4 (1), pp.ycad005. ⟨10.1093/ismeco/ycad005⟩
Article dans une revue hal-04492228v1
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Diversity and biogeography of bathyal and abyssal seafloor bacteria and archaea along a Mediterranean-Atlantic gradient

Blandine Trouche , Miriam Brandt , Caroline Belser , Covadonga Orejas , Stephane Pesant , et al.
Frontiers in Microbiology, 2021, 12, pp.702016. ⟨10.3389/fmicb.2021.702016⟩
Article dans une revue hal-03589735v1
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Metagenomes of the picoalga Bathycoccus from the Chile coastal upwelling.

Daniel Vaulot , Cécile Lepère , Eve Toulza , Rodrigo de La Iglesia , Julie Poulain , et al.
PLoS ONE, 2012, 7 (6), pp.e39648. ⟨10.1371/journal.pone.0039648⟩
Article dans une revue hal-00848707v1

Distribution and genomic variation of ammonia-oxidizing archaea in abyssal and hadal surface sediments

Blandine Trouche , Clemens Schauberger , Feriel Bouderka , Jean-Christophe Auguet , Caroline Belser , et al.
ISME Communications, 2023, 3 (1), pp.133. ⟨10.1038/s43705-023-00341-6⟩
Article dans une revue hal-04388214v1
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Evaluating sediment and water sampling methods for the estimation of deep-sea biodiversity using environmental DNA

Miriam I Brandt , Florence Pradillon , Blandine Trouche , Nicolas Henry , Cathy Liautard-Haag , et al.
Scientific Reports, 2021, 11 (1), pp.7856. ⟨10.1038/s41598-021-86396-8⟩
Article dans une revue hal-03198097v1
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Patterns of eukaryotic diversity from the surface to the deep-ocean sediment

Tristan Cordier , Inès Barrenechea Angeles , Nicolas Henry , Franck Lejzerowicz , Cédric Berney , et al.
Science Advances , 2022, 8 (5), ⟨10.1126/sciadv.abj9309⟩
Article dans une revue hal-03561462v1